DOmain Graph via coMparative analysis for Arabidopsis thaliana

Software Download

You may download DOGMA tool here.

Accessory data (proteome & domain) can be downloaded here.

Online Services

Draw Graph for Arabidopsis' domain.

Shortest Path analysis of domain connections.

Compare domain graphs between Arabidopsis and different genomes.

Phylogenetic Profiling of domains and domain combinations.

Query Arabidopsis ' domains by connection degree, clustering coefficient and ``signature" percentage.

Results

Domain Index for Pfam14.0 and Arabidopsis (TIGR5.0).

Proteome Index and Graph Properties for 57 genomes.

General Survey of the phylogenetic distribution for Arabidopsis' domain graph.

Signature Graph and Tissue_specific Graph of Arabidopsis' proteome.

Annotation of unknown domain in Arabidopsis by domain graph.

List of Arabidopsis ' domains ranked by connection degree, clustering coefficient and ``signature" percentage.

Other useful websites

Graphviz

Algorithm

TAIR

MPSS

NCBI