Currently DOGMA database includes 56 proteomes (10 Eukaryotic, 30 bacterial, and 16 archael genomes) for comparative analysis of Arabidopsis' domain graph. The number of genomes will be increased over time.

    no indexorganism full namekingdomsub_kingdomsourceORFsinforeference
    1 AthArabidopsis thalianaEukaryotePlantTAIR29161 linkNature 408,796-815
    2 CelCaenorhabditis elegansEukaryoteAnimalWormBase22174 linkScience 282,1126-32
    3 CiaCiona intestinalisEukaryoteAnimalJGI15852 linkScience 298,2157-67
    4 DmeDrosophila melanogasterEukaryoteAnimalFlyBase18746 linkScience 287,2185-95
    5 FugFugu rubripesEukaryoteAnimalJGI37439 linkScience 297,1301-10
    6 HsaHomo sapiensEukaryoteAnimalNCBI27175 linkNature 409,860-921
    7 MmuMus musculusEukaryoteAnimalNCBI25371 linkNature 420,520-62
    8 CalCandida albicansEukaryoteFungiPasteur6165 link
    9 SceSaccharomyces cerevisiaeEukaryoteFungiSGD5887 linkNature 387,5-105
    10 SpoSchizosaccharomyces pombeEukaryoteFungiNCBI5000 linkNature 415,871-80
    11 NcrNeurospopora crassaEukaryoteFungiBroad10082 linkNature 422,859-68

    no indexorganism full namekingdomsub_kingdomsourceORFsinforeference
    12 AtuAgrobacterium tumefaciens str. C58BacteriaPlant pathogenNCBI5402 linkScience 294,2317-23
    13 BbuBorrelia burgdorferi B31BacteriaNCBI851 linkNature 390,580-6
    14 BmeBrucella melitensis 16MBacteriaNCBI3198 linkPNAS 99,443-8
    15 BsuBacillus subtilis subsp. subtilis str. 168BacteriaNCBI4106 linkNature 390,249-256
    16 CacClostridium acetobutylicum ATCC 824BacteriaNCBI3848 linkJ.Bacteriol. 183,4823-38
    17 CcrCaulobacter crescentus CB15BacteriaNCBI3737 linkPNAS 98,4136-41
    18 CjeCampylobacter jejuni NCTC 11168BacteriaNCBI1634 linkNature 403,665-8
    19 CmuChlamydia muridarumBacteriaNCBI904 linkNAR 28,1397-1406
    20 CpnChlamydophila pneumoniae CWL029BacteriaNCBI1054 linkNat. Genet. 21,385-9
    21 CtrChlamydia trachomatis D/UW-3/CXBacteriaNCBI895 linkScience 282,754-9
    22 DraDeinococcus radiodurans R1BacteriaNCBI3182 linkScience 286,1571-77
    23 EcoEscherichia coli K12BacteriaNCBI4311 linkScience 277,1453-74
    24 HinHaemophilus influenzae Rd KW20BacteriaNCBI1657 linkScience 269,496-512
    25 HpyHelicobacter pylori 26695BacteriaNCBI1576 linkNature 388,539-547
    26 LlaLactococcus lactis subsp. lactis Il1403BacteriaNCBI2321 linkGenome Res. 11,731-53
    27 MleMycobacterium leprae TNBacteriaNCBI1605 linkNature 409,1007-11
    28 MpnMycoplasma pneumoniae M129BacteriaNCBI689 linkNAR 24,4420-49
    29 MpuMycoplasma pulmonis UAB CTIPBacteriaNCBI782 linkNAR 29,2145-53
    30 MtuMycobacterium tuberculosis H37RvBacteriaNCBI3927 linkNature 393,537-44
    31 NmeNeisseria meningitidis MC58BacteriaNCBI2079 linkScience 287,1809-15
    32 PerPseudomonas aeruginosa PA01BacteriaNCBI5567 linkNature 406,959-64
    33 RprRickettsia prowazekii str. Madrid EBacteriaNCBI835 linkNature 396, 133-140
    34 RsoRalstonia solanacearum GMI1000BacteriaPlant pathogenNCBI3440 linkNature 415,497-502
    35 ScoStreptomyces coelicolor A3(2)BacteriaNCBI8154 linkNature 417,141-7
    36 SpcSynechocystis sp. PCC 6803BacteriaNitrogen fixingNCBI3167 linkDNA Res. 3,109-136
    37 SpyStreptococcus pyogenes M1 GASBacteriaNCBI1697 linkPNAS 98,4658-63
    38 TmaThermotoga maritima MSB8BacteriaNCBI1858 linkNature 399,323-9
    39 TpaTreponema pallidumBacteriaNCBI1036 linkScience 281,375-88
    40 UurUreaplasma urealyticumBacteriaNCBI614 linkNature 407,757-62
    41 VchVibrio cholerae N16961BacteriaNCBI3835 linkNature 406,477-83

    no indexorganism full namekingdomsub_kingdomsourceORFsinforeference
    1 AfuArchaeoglobus fulgidus DSM4304ArchaeahyperthermophileNCBI2420 linkNature 390,364-75
    2 ApeAeropyrum pernix K1ArchaeahyperthermophileNCBI1841 linkDNA Res. 6,83-101
    3 HalHalobacterium sp. NRC-1ArchaeaNCBI2622 linkPNAS 97,12176-81
    4 MacMethanosarcina acetivorans str. C2AArchaeaNCBI4540 linkGenome Res. 12,532-42
    5 MjaMethanocaldococcus jannaschii DSM2661ArchaeaNCBI1733 linkScience 273,1058-73
    6 MkaMethanopyrus kandleri AV19ArchaeaNCBI1687 linkPNAS 99,4644-49
    7 MmaMethanosarcina mazei Go1ArchaeaNCBI3371 linkMol.M.B. 4,453-61
    8 MthMethanothermobacter thermautotrophicusArchaeaNCBI1873 linkJ.Bacteriol. 179,7135-55
    9 PabPyrococcus abyssi GE5ArchaeahyperthermophileNCBI1896 linkMol.Microbiol. 47,1495-1512
    10 PaePyrobaculum aerophilum str. IM2ArchaeaNCBI2605 linkPNAS 99,984-9
    11 PfuPyrococcus furiosus DSM3638ArchaeaNCBI2125 linkMethods Enz. 330,134-57
    12 PhoPyrococcus horikoshii OT3ArchaeahyperthermophileNCBI1956 linkDNA Res. 5,55-76
    13 SsoSulfolobus solfataricus P2ArchaeaNCBI2977 linkPNAS 98,7835-40
    14 StoSulfolobus tokodaii str. 7ArchaeaNCBI2826 linkDNA Res. 8,123-40
    15 TacThermoplasma acidophilum DSM1728ArchaeaNCBI1482 linkNature 407,508-13
    16 TvoThermoplasma volcanium GSS1ArchaeaNCBI1499 linkPNAS 97,12176-81