Prediction of Binding Afinity, Interface Recognization
Application: Prediction of binding affinity of protein complex
Discrimination true interface from artificial interfaces in crystalline state
PDB file:
Or PDB ID(lower case):
Protein Complex Interface:
number of chain(s) (first component):
chain name(s) of first component(upper case):
number of chain(s) (second component):
chain name(s) of second component(upper case):
usage: for example, in pdb file 1abi, there are three chains: H,L,I. Chains H and L are antibody, and Chains I is antigene. Thus, its input and output are like the following:
Input
The number of chain(s) (first component): 2
chain name(s) of first component(upper case): HL
The number of chain(s) (second component): 1
chain name(s) of second component(upper case): I
Output
The number of residue in the first component: 244
The number of residue in the second component: 19
The binding free energy is -14.277265 Kcal/mol.

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