ddna: Prediction of Binding Afinity of Protein and DNA

Prediction of Binding Afinity of Protein and DNA

PDB file:

Or PDB ID(lower case):

Protein-DNA Complex Interface:

The number of chain(s) (first component):
chain name(s) of first component(upper case):
The number of chain(s) (second component):
chain name(s) of second component(upper case):

usage: for example, in pdb file 1cma, there are four chains: A,B,C,D. Chains A and B are protein structures, and Chains C and D are DNA structures. Thus, its input and output are like the following:

Input
	The number of chain(s) (first component): 2
	chain name(s) of first component(upper case): AB
	The number of chain(s) (second component): 2
	chain name(s) of second component(upper case): CD
Output
	Predicted Binding Affinity=-7.01 kcal/mol

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