SPEM free download

spem.tar.gz

DDOMAIN free download

DDOMAIN.tar.gz

ENDES free download

ENDES.tar.gz

SPARKS/SP3 free download available in the service page

SPINE/Real-SPINE free download available in the service page

Databases

Databases of alpha, beta proteins 397 alpha proteins 438 beta proteins Mutation database download The 1023 large-to-small mutations (based on [native residue volume - mutant residue volume > - 5 A^3] ) Ref. [51] The 895 large-to-small mutations (based on [native number of heavy atoms > mutant number of heavy atoms] ) Ref. [52] 200 protein pdb name list 200 soluble proteins Ref. [57] Database of transmembrane proteins with 3-D structures 73 protein sequences 73 protein topologies 73 protein pdb list Ref. [56] pdb-to-tcd.f download Send your request to yqzhou@buffalo.edu Energy function for SPARKS 20X25 contact energy function contact energy function usage SALIGN